Job summary
Job ID
3LNY_22_corretto56e8af8853db2
PDB ID
3LNY_receptor.pdb
Chain
all
Binding site
22 and residues within 7.5 Å
Results
Backbone
scaffold
Representative
sequence
Average
FoldX energy
Sequence
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complex
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complex
1 PEAVV -9.3
2 PLAVV -9.0
3 PLAVV -8.8
4 PLAYV -8.4
5 PVLSTI -8.4
6 PLAYV -8.2
7 QVTAV -8.1
8 EVNTIL -7.9
9 PQVTVV -7.8
10 GDVVI -7.8
11 TLSTI -7.3
12 GDVEVR -7.1
13 PVSTV -7.1
14 PTYAPA -7.1
15 ATLV -7.1
16 TVTVV -6.9
17 PDSVV -6.8
18 PVSVA -6.8
19 PVTTA -6.8
20 PLSLA -6.6
21 GTTL -6.6
22 TACRVI -6.4
23 QPATEVV -6.4
24 PTLV -6.4
25 ACVVV -6.3
26 ATLV -6.3
27 PVGVA -6.2
28 PEAPA -6.1
29 TQTASV -6.0
30 PVGVA -5.9
31 PVSVA -5.7
32 PVSVA -5.6
33 TNVV -5.5
34 PTKV -5.2
35 PYDVVI -5.2
36 TLQPGG -5.1
37 EPKEIVI -5.0
38 QTIG -5.0
39 TGDVVI -5.0
40 EVVTS -4.9
41 VTVV -4.9
42 QVGVE -4.9
43 TVTKA -4.9
44 VLTLG -4.8
45 TADNTV -4.7
46 VLTL -4.7
47 TIEG -4.6
48 TSTL -4.6
49 VATKA -4.5
50 IIILPG -4.5
51 PLGCA -4.4
52 TSVIG -4.3
53 LQPG -4.3
54 VLWLPG -4.3
55 VITMPG -4.1
56 QFAS -3.9
57 TGDNVV -3.8
58 TMVGYE -3.5
59 TSTV -3.4
60 LQPGG -3.4
61 VITV -3.2
62 IVIL -3.2
63 TLQG -3.1
64 PGTVK -3.1
65 TQTAKV -3.1
66 TQVG -3.0
67 PAYG -2.8
68 KSIG -2.7
69 TVHG -2.2
70 TSGSG -2.1
71 TQVGY -2.0
72 PAVVVV -1.9
73 PEESG -1.8
74 EERG -1.8
75 VDVG -1.6
76 TEVA -1.5
77 TVST -1.2
78 DTQVV -1.1
79 GEYVG -1.0
80 PEEG -0.8
81 PTQEY -0.7
82 PKSRV 0.1
83 LTGL 0.2
84 GSATG 1.0
85 TEDG 1.7
86 PVDVAP 3.5

The binding site is highlighted in darkcyan (selected residue) and darkviolet (residues within the selected cutoff). The designed peptide is shown in sticks and is colored according to the CPK scheme.

Peptide sequences obtained from backbone scaffold 1
Peptide
sequence
FoldX
energy
Number of
sequences
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