Job summary
Job ID
3NJG_92_1056eae58e1261a
PDB ID
3NJG_receptor.pdb
Chain
all
Binding site
92 and residues within 10 Å
Results
Backbone
scaffold
Representative
sequence
Average
FoldX energy
Sequence
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1 GRVFAY -11.8
2 LTIYVR -11.8
3 GRVVCG -11.5
4 GRVFA -10.9
5 TYIKIYG -10.3
6 GRVCAG -10.2
7 VTILV -10.1
8 RVVSQG -10.1
9 GVVIQ -9.9
10 GRVCA -9.8
11 VRLIISG -9.5
12 AQVVAVG -9.4
13 GRVCA -9.4
14 TETRIY -9.1
15 VRVIIG -9.0
16 NVVAIN -8.8
17 RVVSG -8.6
18 TVVATN -8.5
19 TVVATN -8.4
20 RCVAYG -8.3
21 NVSAPG -8.1
22 IVKSLG -7.8
23 GAVYV -7.7
24 GYVYT -7.6
25 IVKSISG -7.6
26 GKVVA -7.5
27 TIYKSH -7.3
28 RVFAVN -7.2
29 TVVATK -7.2
30 SCVVT -7.1
31 VKLVVG -6.9
32 RVVVE -6.9
33 TVTIG -6.7
34 RTHSTI -6.6
35 GNIVVG -6.4
36 RVVS -6.3
37 RCFKYG -6.2
38 KIVILK -6.1
39 VRIVIL -6.0
40 GGIYKG -6.0
41 VRVFI -5.9
42 ARVG -5.9
43 VKAIN -5.8
44 GELRVG -5.7
45 VVIDG -5.7
46 RGVCSG -5.6
47 VTITK -5.6
48 VKLVA -5.6
49 RACAG -5.6
50 RCTEG -5.2
51 CKMIK -4.5
52 VKIGI -4.5
53 CHIVI -4.3
54 VRVFAY -4.1
55 GMVVT -4.0
56 TALVIG -3.6
57 VCFVDG -3.3
58 HKCTS -3.0
59 NVTHG -3.0
60 HRIYIG -2.9
61 GKSEVR -2.5
62 IVVK -2.4
63 PLVGG -2.2
64 TVILPL -1.9
65 FPVVSG -1.2

The binding site is highlighted in darkcyan (selected residue) and darkviolet (residues within the selected cutoff). The designed peptide is shown in sticks and is colored according to the CPK scheme.

Peptide sequences obtained from backbone scaffold 1
Peptide
sequence
FoldX
energy
Number of
sequences
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complex