Job summary
Job ID
3upv_77_8_56f1ebe0ef598
PDB ID
3UPVreceptor.pdb
Chain
all
Binding site
77 and residues within 8 Å
Results
Backbone
scaffold
Representative
sequence
Average
FoldX energy
Sequence
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complex
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complex
1 PDIG -4.0
2 EIVTG -2.5
3 PLVG -2.3
4 TEIETG -1.7
5 TPEE -1.6
6 TDIG -1.6
7 PTCG -1.4
8 QPRP -1.4
9 PEITS -1.1
10 PYVGK -1.0
11 PVVK -1.0
12 TDVG -1.0
13 GECP -0.8
14 PLVGIG -0.7
15 TTVLA -0.7
16 PDVHSG -0.6
17 PVGIG -0.4
18 GTTG -0.4
19 TDQG -0.1
20 EVTG -0.1
21 EEYIYA -0.0
22 GDVG 0.2
23 PTVPE 0.2
24 TTVLPG 0.5
25 LNIG 0.5
26 EDVG 0.8
27 TVTG 0.8
28 TALG 0.9
29 SGVVTV 0.9
30 DNVEEL 1.3
31 TTVDDYT 1.3
32 SSGG 1.4
33 ETPA 1.4
34 TCDT 1.5
35 GTDL 1.7
36 TVAG 2.8
37 TVIS 4.1
38 GDVP 5.7
39 SGVVG 7.0
40 GEPPG 7.1

The binding site is highlighted in darkcyan (selected residue) and darkviolet (residues within the selected cutoff). The designed peptide is shown in sticks and is colored according to the CPK scheme.

Peptide sequences obtained from backbone scaffold 1
Peptide
sequence
FoldX
energy
Number of
sequences
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complex