Job summary
Job ID
4dgy_10856f56fdc086b9
PDB ID
4DGY_receptor.pdb
Chain
all
Binding site
108 and residues within 7.5 Å
Results
Backbone
scaffold
Representative
sequence
Average
FoldX energy
Sequence
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complex
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complex
1 WCMRN -3.3
2 MAVS -2.8
3 PTQTG -2.5
4 ALIAALG -2.4
5 GWQL -2.3
6 KMIG -2.2
7 GLVDG -2.1
8 GTVP -2.0
9 AGVG -1.9
10 VYVE -1.9
11 PGVVG -1.8
12 GLVE -1.7
13 GADV -1.7
14 GSGVVTG -1.7
15 GSGVVG -1.6
16 TNSP -1.6
17 KGFG -1.5
18 IAVG -1.3
19 GIVG -1.2
20 PGVG -1.2
21 ALIK -1.1
22 GLLVF -1.1
23 GSGVR -1.0
24 TVVTG -0.7
25 QVSG -0.7
26 AQVLG -0.6
27 SATG -0.6
28 GNAG -0.5
29 AQVYG -0.3
30 GSGI -0.3
31 STVDA -0.3
32 IQELG -0.3
33 MLTSG -0.3
34 GAVF -0.2
35 MKQSSG -0.2
36 GVFG -0.1
37 GMVK -0.1
38 KGTVG 0.1
39 PLPP 0.2
40 TSVPP 0.3
41 MGSQG 0.3
42 GGTG 0.4
43 STVI 0.4
44 MKCG 0.5
45 ATVI 0.7
46 LICSL 0.9
47 MKAVG 0.9
48 GQTDG 1.0
49 ATDA 1.0
50 TGGGG 1.1
51 GGGG 1.2
52 VIPG 1.2
53 GDTD 1.3
54 AVGG 1.5
55 GLYVK 1.6
56 KVYVG 1.6
57 LAVV 2.0
58 SCFK 2.3
59 PKVG 2.4
60 MGAEAR 2.4
61 MAVTG 2.8
62 LGSSG 2.8
63 GAMSG 2.9
64 GMCKIK 3.1
65 RTAV 3.1
66 SGQG 3.2
67 ALYG 3.3
68 AGPG 3.6
69 TVIL 3.8
70 ISTG 3.8
71 GLQKVA 3.8
72 GAVAG 3.9
73 AGAGG 4.0
74 GYSG 4.2
75 MGKG 4.3
76 GGTYVG 4.6
77 GGCVV 4.7
78 AAFG 4.9
79 GECRG 5.0
80 TGTG 5.2
81 GGVVG 5.5
82 ATGW 5.7
83 GYIG 6.0
84 AGCG 7.2
85 GGTAG 7.6

The binding site is highlighted in darkcyan (selected residue) and darkviolet (residues within the selected cutoff). The designed peptide is shown in sticks and is colored according to the CPK scheme.

Peptide sequences obtained from backbone scaffold 1
Peptide
sequence
FoldX
energy
Number of
sequences
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complex